Genomic Sequence Analysis for Exon Prediction Using Adaptive Signal Processing Algorithms

Genomic Sequence Analysis for Exon Prediction Using Adaptive Signal Processing Algorithms
Title Genomic Sequence Analysis for Exon Prediction Using Adaptive Signal Processing Algorithms PDF eBook
Author Md. Zia Ur Rahman
Publisher CRC Press
Pages 227
Release 2021-06-30
Genre Science
ISBN 1000375226

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This book addresses the issue of improving the accuracy in exon prediction in DNA sequences using various adaptive techniques based on different performance measures that are crucial in disease diagnosis and therapy. First, the authors present an overview of genomics engineering, structure of DNA sequence and its building blocks, genetic information flow in a cell, gene prediction along with its significance, and various types of gene prediction methods, followed by a review of literature starting with the biological background of genomic sequence analysis. Next, they cover various theoretical considerations of adaptive filtering techniques used for DNA analysis, with an introduction to adaptive filtering, properties of adaptive algorithms, and the need for development of adaptive exon predictors (AEPs) and structure of AEP used for DNA analysis. Then, they extend the approach of least mean squares (LMS) algorithm and its sign-based realizations with normalization factor for DNA analysis. They also present the normalized logarithmic-based realizations of least mean logarithmic squares (LMLS) and least logarithmic absolute difference (LLAD) adaptive algorithms that include normalized LMLS (NLMLS) algorithm, normalized LLAD (NLLAD) algorithm, and their signed variants. This book ends with an overview of the goals achieved and highlights the primary achievements using all proposed techniques. This book is intended to provide rigorous use of adaptive signal processing algorithms for genetic engineering, biomedical engineering, and bioinformatics and is useful for undergraduate and postgraduate students. This will also serve as a practical guide for Ph.D. students and researchers and will provide a number of research directions for further work. Features Presents an overview of genomics engineering, structure of DNA sequence and its building blocks, genetic information flow in a cell, gene prediction along with its significance, and various types of gene prediction methods Covers various theoretical considerations of adaptive filtering techniques used for DNA analysis, introduction to adaptive filtering, properties of adaptive algorithms, need for development of adaptive exon predictors (AEPs), and structure of AEP used for DNA analysis Extends the approach of LMS algorithm and its sign-based realizations with normalization factor for DNA analysis Presents the normalized logarithmic-based realizations of LMLS and LLAD adaptive algorithms that include normalized LMLS (NLMLS) algorithm, normalized LLAD (NLLAD) algorithm, and their signed variants Provides an overview of the goals achieved and highlights the primary achievements using all proposed techniques Dr. Md. Zia Ur Rahman is a professor in the Department of Electronics and Communication Engineering at Koneru Lakshmaiah Educational Foundation (K. L. University), Guntur, India. His current research interests include adaptive signal processing, biomedical signal processing, genetic engineering, medical imaging, array signal processing, medical telemetry, and nanophotonics. Dr. Srinivasareddy Putluri is currently a Software Engineer at Tata Consultancy Services Ltd., Hyderabad. He received his Ph.D. degree (Genomic Signal Processing using Adaptive Signal Processing algorithms) from the Department of Electronics and Communication Engineering at Koneru Lakshmaiah Educational Foundation (K. L. University), Guntur, India. His research interests include genomic signal processing and adaptive signal processing. He has published 15 research papers in various journals and proceedings. He is currently a reviewer of publishers like the IEEE Access and IGI.

Proceedings of International Conference on Communication and Computational Technologies

Proceedings of International Conference on Communication and Computational Technologies
Title Proceedings of International Conference on Communication and Computational Technologies PDF eBook
Author Sandeep Kumar
Publisher Springer Nature
Pages 1012
Release 2021-08-23
Genre Technology & Engineering
ISBN 9811632464

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This book gathers selected papers presented at 3rd International Conference on Communication and Computational Technologies (ICCCT 2021), jointly organized in virtual format by Rajasthan Institute of Engineering and Technology, Jaipur and Rajasthan Technical University Kota in association with Soft Computing Research Society, during 27–28 February 2021. The volume is a collection of state-of-the-art research work in the cutting-edge technologies related to communication and intelligent systems. The topics covered are algorithms and applications of intelligent systems, informatics and applications, and communication and control systems.

Proceedings of 2nd International Conference on Artificial Intelligence: Advances and Applications

Proceedings of 2nd International Conference on Artificial Intelligence: Advances and Applications
Title Proceedings of 2nd International Conference on Artificial Intelligence: Advances and Applications PDF eBook
Author Garima Mathur
Publisher Springer Nature
Pages 850
Release 2022-02-14
Genre Technology & Engineering
ISBN 9811663327

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This book gathers outstanding research papers presented in the 2nd International Conference on Artificial Intelligence: Advances and Application (ICAIAA 2021), held in Poornima College of Engineering, Jaipur, India during 27-28 March 2021. This book covers research works carried out by various students such as bachelor, master and doctoral scholars, faculty and industry persons in the area of artificial intelligence, machine learning, deep learning applications in healthcare, agriculture, business, security, etc. It will also cover research in core concepts of computer networks, intelligent system design and deployment, real time systems, WSN, sensors and sensor nodes, SDN, NFV, etc.

Signal Processing Methods for Genomic Sequence Analysis

Signal Processing Methods for Genomic Sequence Analysis
Title Signal Processing Methods for Genomic Sequence Analysis PDF eBook
Author Byung-Jun Yoon
Publisher
Pages 0
Release 2007
Genre Bioinformatics
ISBN

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Algorithms for Next-Generation Sequencing

Algorithms for Next-Generation Sequencing
Title Algorithms for Next-Generation Sequencing PDF eBook
Author Wing-Kin Sung
Publisher CRC Press
Pages 362
Release 2017-05-18
Genre Computers
ISBN 1466565519

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Advances in sequencing technology have allowed scientists to study the human genome in greater depth and on a larger scale than ever before – as many as hundreds of millions of short reads in the course of a few days. But what are the best ways to deal with this flood of data? Algorithms for Next-Generation Sequencing is an invaluable tool for students and researchers in bioinformatics and computational biology, biologists seeking to process and manage the data generated by next-generation sequencing, and as a textbook or a self-study resource. In addition to offering an in-depth description of the algorithms for processing sequencing data, it also presents useful case studies describing the applications of this technology.

Advances in Genomic Sequence Analysis and Pattern Discovery

Advances in Genomic Sequence Analysis and Pattern Discovery
Title Advances in Genomic Sequence Analysis and Pattern Discovery PDF eBook
Author Laura Elnitski
Publisher World Scientific
Pages 236
Release 2011
Genre Science
ISBN 9814327727

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Mapping the genomic landscapes is one of the most exciting frontiers of science. We have the opportunity to reverse engineer the blueprints and the control systems of living organisms. Computational tools are key enablers in the deciphering process. This book provides an in-depth presentation of some of the important computational biology approaches to genomic sequence analysis. The first section of the book discusses methods for discovering patterns in DNA and RNA. This is followed by the second section that reflects on methods in various ways, including performance, usage and paradigms.

Computational Exome and Genome Analysis

Computational Exome and Genome Analysis
Title Computational Exome and Genome Analysis PDF eBook
Author Peter N. Robinson
Publisher CRC Press
Pages 444
Release 2017-09-13
Genre Computers
ISBN 1351650815

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Exome and genome sequencing are revolutionizing medical research and diagnostics, but the computational analysis of the data has become an extremely heterogeneous and often challenging area of bioinformatics. Computational Exome and Genome Analysis provides a practical introduction to all of the major areas in the field, enabling readers to develop a comprehensive understanding of the sequencing process and the entire computational analysis pipeline.