These guidelines present the basic concepts involved in the development and implementation of in vivo conservation plans for animal genetic resources for food and agriculture. The guidelines are intended for use by policy-makers in the management of animal genetic resources, managers of animal breeding organizations, persons responsible for training in management of animal genetic resources and any other stakeholders with leading roles in designing and implementing in vivo conservation programmes for animal genetic resources. Although individual breeders and livestock keepers are not the direct target audience, the guidelines include background information that is relevant for all stakeholders involved in planning conservation programmes.

"The genetic diversity comprised in farm animal species and breeds is an important resource in livestock systems. For several reasons, within the different species used for food production, only a few breeds are developed towards high-output breeds fitting in high-input systems. In this process many breeds are set aside from the food producing livestock systems. These breeds will be faced with extinction unless new functions for these breeds are found. This is a real threat for the genetic diversity within species. This book is intended to give insight into the issues of the utilisation and conservation of farm animal genetic resources towards a broad group of readers interested in these subjects. The insight is presented as applications of population, molecular and quantitative genetics that can be used to take appropriate decisions in utilisation and conservation programmes. A previous edition of this book is a key resource in courses worldwide and cited in many scientific publications. The first two chapters discuss the decisions to be made in utilisation and conservation. Chapter 3 surveys the different ways in which the diversity we observe within a species can be characterised. Chapter 4 illustrates recent results using this theory for utilisation and conservation purposes. Chapters 5, 6 and 7 give theoretical backgrounds necessary to make decisions and chapters 8 and 9 present the operation and practical implications of selection and conservation schemes."

The history of livestock started with the domestication of their wild ancestors: a restricted number of species allowed to be tamed and entered a symbiotic relationship with humans. In exchange for food, shelter and protection, they provided us with meat, eggs, hides, wool and draught power, thus contributing considerably to our economic and cultural development. Depending on the species, domestication took place in different areas and periods. After domestication, livestock spread over all inhabited regions of the earth, accompanying human migrations and becoming also trade objects. This required an adaptation to different climates and varying styles of husbandry and resulted in an enormous phenotypic diversity. Approximately 200 years ago, the situation started to change with the rise of the concept of breed. Animals were selected for the same visible characteristics, and crossing with different phenotypes was reduced. This resulted in the formation of different breeds, mostly genetically isolated from other populations. A few decades ago, selection pressure was increased again with intensive production focusing on a limited range of types and a subsequent loss of genetic diversity. For short-term economic reasons, farmers have abandoned traditional breeds. As a consequence, during the 20th century, at least 28% of farm animal breeds became extinct, rare or endangered. The situation is alarming in developing countries, where native breeds adapted to local environments and diseases are being replaced by industrial breeds. In the most marginal areas, farm animals are considered to be essential for viable land use and, in the developing world, a major pathway out of poverty. Historic documentation from the period before the breed formation is scarce. Thus, reconstruction of the history of livestock populations depends on archaeological, archeo-zoological and DNA analysis of extant populations. Scientific research into genetic diversity takes advantage of the rapid advances in molecular genetics. Studies of mitochondrial DNA, microsatellite DNA profiling and Y-chromosomes have revealed details on the process of domestication, on the diversity retained by breeds and on relationships between breeds. However, we only see a small part of the genetic information and the advent of new technologies is most timely in order to answer many essential questions. High-throughput single-nucleotide polymorphism genotyping is about to be available for all major farm animal species. The recent development of sequencing techniques calls for new methods of data management and analysis and for new ideas for the extraction of information. To make sense of this information in practical conditions, integration of geo-environmental and socio-economic data are key elements. The study and management of farm animal genomic resources (FAnGR) is indeed a major multidisciplinary issue. The goal of the present Research Topic was to collect contributions of high scientific quality relevant to biodiversity management, and applying new methods to either new genomic and bioinformatics approaches for characterization of FAnGR, to the development of FAnGR conservation methods applied ex-situ and in-situ, to socio-economic aspects of FAnGR conservation, to transfer of lessons between wildlife and livestock biodiversity conservation, and to the contribution of FAnGR to a transition in agriculture (FAnGR and agro-ecology).

This book provides an overview of developments in the conservation and sustainable utilisation of Farm Animal Genetic Resources. It is based on presentations given at a conference on this subject co-organised by the British Society of Animal Science, the Department for Environment, Food and Rural Affairs, the Rare Breeds Survival Trust and the Sheep Trust.

Sustainable use, development and conservation of the world's livestock genetic resources are of vital importance to agriculture, food production, rural development and the environment. In recognition of the need to develop and effective framework for the management of these resources and to address the threat of genetic erosion, 109 countries came together in September 2007 at the first International Technical Conference on Animal Genetic Resources for Food and Agriculture held in Interlaken, Switzerland. The Conference adopted the Global Plan of Action for Animal Genetic Resources- which includes 23 strategic priorities for action to promote the wise management of these vital resources. The Global Plan of Action is the outcome of a country-driven process of reporting, analysis and discussion, which also resulted in the preparation of the State of the World's Animal Genetic Resources for Food and Agriculture, the first comprehensive global assessment of livestock diversity and its management. The Conference also adopted the Interlaken Declaration on Animal Genetic Resources, which affirms countries' commitment to the implementation of the global Plan of Action and to ensuring that the world's livestock biodiversity is utilised to promote global food security and remain available to future generations.

Sustainable management of the world's livestock genetic diversity is of vital importance to agriculture, food production, rural development and the environment. "The State of the World's Animal Genetic Resources for Food and Agriculture" is the first global assessment of these resources. Drawing on 169 Country Reports, contributions from a number of international organizations and 12 specially commissioned thematic studies, it presents an analysis of the state of agricultural biodiversity in the livestock sector - origins and development, uses and values, distribution and exchange, risk status and threats - and of capacity to manage these resources - institutions, policies and legal frameworks, structured breeding activities and conservation programmes. Needs and challenges are assessed in the context of the forces driving change in livestock production systems. Tools and methods to enhance the use and development of animal genetic resources are explored in sections on the state of the art in characterization, genetic improvement, economic evaluation and conservation. The main findings of the report are summarized in "The State of the World's Animal Genetic Resources for Food and Agriculture - in brief," of which the Arabic, Chinese, English, French, Russian and Spanish versions can be found on the attached CD-ROM and are also available separately in printed form. As well providing a technical reference document, the country-based preparation of "The State of the World" has led to a process of policy development and a "Global Plan of Action for Animal Genetic Resources," which once adopted, will provide an agenda for action by the international community. Published also in French.