Soil organic matter (SOM) is the terrestrial biosphere's largest pool of organic carbon (C) and is an integral part of C cycling globally. Soil organic matter composition typically can be traced directly back to the type of detrital inputs; however, the stabilization of SOM results as a combination of chemical recalcitrance, protection from microbial decomposition within soil structure, and organo-mineral interactions. A long-term manipulative field experiment, the Detrital Input and Removal Treatment (DIRT) Project, was established to examine effects of altering detrital inputs (above- vs. below-ground source, C and nitrogen (N) quantity, and chemical quality) on the stabilization and retention of SOM. Surface mineral soil was collected from two DIRT sites, Bousson (a deciduous site in western Pennsylvania) and H.J. Andrews (a coniferous site in the Oregon Cascade Mountains), to examine the influence of altering detrital inputs on decomposability and mean residence time of soil organic matter and different organic matter fractions. Soil organic matter was physically separated into light fraction (LF) and heavy fraction (HF) organic matter, by density fractionation in 1.6 g mL−1 sodium polytungstate (SPT). Density fractionation in SPT resulted in the mobilization and loss of ~25% of total soil organic C and N during the physical separation and rinsing of fractions during recovery, which was also the most easily decomposed organic matter present in the bulk soil. At H.J. Andrews, this mobilized organic matter had a short mean residence time (MRT), indicating that it originated from fresh detrital inputs. In contrast, at Bousson, the organic matter mobilized had a long MRT, indicating that it originated from organic matter that had already been stabilized in the soil. Mean residence times of LF from Bousson varied widely, ~3 y from doubled litter and control plots and 78-185 y for litter removal plots, while MRT of HF was ~250 y and has not yet been affected by litter manipulations. Results from long term incubation of LF and HF material supported these estimates; respiration was greatest from LF of doubled litter and control plots and least from HF of litter removal plots. In contrast, MRT estimated for LF and HF organic matter from H.J. Andrews were similar to each other (~100 y) and were not affected by litter manipulation. These estimates were also supported by the incubation results; there was not a difference in cumulative respiration between detrital treatments or density fractions. The results from the coniferous site may be due to a legacy of historically large inputs of coarse woody debris on the LF and it may be decades before the signal of detrital manipulations can be measured. Alternatively, these highly andic soils may be accumulating C rapidly, yielding young HF ages and C that does not differ substantially in lability from coniferous litter-derived LF. The DIRT Project was intended to follow changes in soil organic matter over decades to centuries. As expected, manipulation of detrital inputs has influenced the lability and mean residence time of the light fraction before the heavy fraction organic matter; however, it will be on much more lengthy time scales that clear differences in organic matter stabilization in response to the alteration of detrital inputs will emerge. Soil CO2 efflux is a compilation of CO2 from many sources, including root respiration and the decomposition of different organic matter fractions, roots, and exudates. If the sources of CO2 have different isotopic signatures, the isotope analysis of CO2 efflux may reveal the dominant sources within the soil profile. In a short incubation experiment of density fractions from both sites, respired CO2 reflected the isotopic signature of the organic matter fraction after 30 days, but was more enriched in 13C. Initially CO2 was isotopically depleted in 13C relative to the organic matter fraction and the period of depletion related to the amount of easily degraded organic matter present at H.J. Andrews only.

This handbook provides an overview of physical, chemical and biological methods used to analyze soils and plant tissue using an ecosystem perspective. The current emphasis on climate change has recognized the importance of including soil carbon as part of our carbon budgets. Methods to assess soils must be ecosystem based if they are to have utility for policy makers and managers wanting to change soil carbon and nutrient pools. Most of the texts on soil analyis treat agriculture and not forest soils and these methods do not transfer readily to forests because of their different chemistry and physical properties. This manual presents methods for soil and plant analysis with the ecosystem level approach that will reduce the risk that poor management decisions will be made in forests. This manual was intended for the instructors that teach students soil and plant analyses; however it can also be used by the research laboratories and by environmental scientists. The laboratory procedures in this manual are outlined in easy-to-follow steps and frequently accompanied with examples of calculations, questions to answer, and also a blank data sheet to use. These methods used in this manual can be used on soil and plant tissues found in agricultural, horticulture, forestry, urban, and natural lands.

As global climate continues to change, it becomes more important to understand possible feedbacks from soils to the climate system. This dissertation focuses on soil microbial community responses to climate change factors in northern hardwood forests. Two soil warming experiments at Harvard Forest in Massachusetts, and a climate change manipulation experiment with both elevated temperature and increased moisture inputs in Michigan were sampled. The hyphal in-growth bag method was to understand how soil fungal biomass and respiration respond to climate change factors. Our results from phospholipid fatty acid (PLFA) analyses suggest that the hyphal in-growth bag method allows relatively pure samples of fungal hyphae to be partitioned from bacteria in the soil. The contribution of fungal hyphal respiration to soil respiration was examined in climate change manipulation experiments in Massachusetts and Michigan. The Harvard Forest soil warming experiments in Massachusetts are long-term studies with 8 and 18 years of +5 °C warming treatment. Hyphal respiration and biomass production tended to decrease with soil warming at Harvard Forest. This suggests that fungal hyphae adjust to higher temperatures by decreasing the amount of carbon respired and the amount of carbon stored in biomass. The Ford Forestry Center experiment in Michigan has a 2 x 2 fully factorial design with warming (+4-5 °C) and moisture addition (+30% average ambient growing season precipitation). This experiment was used to examine hyphal growth and respiration of arbuscular mycorrhizal fungi (AMF), soil enzymatic capacity, microbial biomass and microbial community structure in the soil over two years of experimental treatment. Results from the hyphal in-growth bag study indicate that AMF hyphal growth and respiration respond negatively to drought. Soil enzyme activities tend to be higher in heated versus unheated soils. There were significant temporal variations in enzyme activity and microbial biomass estimates. When microbial biomass was estimated using chloroform fumigation extractions there were no differences between experimental treatments and the control. When PLFA analyses were used to estimate microbial biomass we found that biomass responds negatively to higher temperatures and positively to moisture addition. This pattern was present for both bacteria and fungi. More information on the quality and composition of the organic matter and nutrients in soils from climate change manipulation experiments will allow us to gain a more thorough understanding of the mechanisms driving the patterns reported here. The information presented here will improve current soil carbon and nitrogen cycling models.

The goal of this project was to investigate changes in the structure of dissolved and solid phase organic matter, the production of CO2 and CH4, and the composition of decomposer microbial communities in response to the climatic forcing of environmental processes that determine the balance between carbon gas production versus storage and sequestration in peatlands. Cutting-edge analytical chemistry and next generation sequencing of microbial genes were been applied to habitats at the Marcell Experimental Forest (MEF), where the US DOE's Oak Ridge National Laboratory and the USDA Forest Service are constructing a large-scale ecosystem study entitled, "Spruce and Peatland Responses Under Climatic and Environmental Change"(SPRUCE). Our study represented a comprehensive characterization of the sources, transformation, and decomposition of organic matter in the S1 bog at MEF. Multiple lines of evidence point to distinct, vertical zones of organic matter transformation: 1) the acrotelm consisting of living mosses, root material, and newly formed litter (0-30 cm), 2) the mesotelm, a mid-depth transition zone (30-75 cm) characterized by labile organic C compounds and intense decomposition, and 3) the underlying catotelm (below 75cm) characterized by refractory organic compounds as well as relatively low decomposition rates. These zones are in part defined by physical changes in hydraulic conductivity and water table depth. O-alkyl-C, which represents the carbohydrate fraction in the peat, was shown to be an excellent proxy for soil decomposition rates. The carbon cycle in deep peat was shown to be fueled by modern carbon sources further indicating that hydrology and surface vegetation play a role in belowground carbon cycling. We provide the first metagenomic study of an ombrotrophic peat bog, with novel insights into microbial specialization and functions in this unique terrestrial ecosystem. Vertical structuring of microbial communities closely paralleled the chemical evolution of peat, with large shifts in microbial populations occurring in the biogeochemical hotspot, the mesotelm, where the highest rates of decomposition were detected. Stable isotope geochemistry and potential rates of methane production paralleled vertical changes in methanogen community composition to indicate a predominance of acetoclastic methanogenesis mediated by the Methanosarcinales in the mesotelm, while hydrogen-utilizing methanogens dominated in the deeper catotelm. Evidence pointed to the availability of phosphorus as well as nitrogen limiting the microbially-mediated turnover of organic carbon at MEF. Prior to initiation of the experimental treatments, our study provided key baseline data for the SPRUCE site on the vertical stratification of peat decomposition, key enzymatic pathways, and microbial taxa containing these pathways. The sensitivity of soil carbon turnover to climate change is strongly linked to recalcitrant carbon stocks and the temperature sensitivity of decomposition is thought to increase with increasing molecular complexity of carbon substrates. This project delivered results on how climate change perturbations impact the microbially-mediated turnover of recalcitrant organic matter in peatland forest soils, both under controlled conditions in the laboratory and at the ecosystem-scale in the field. This project revisited the concept of "recalcitrance" in the regulation of soil carbon turnover using a combination of natural abundance radiocarbon and optical spectroscopic measurements on bulk DOM, and high resolution molecular characterization of DOM. The project elucidated how organic matter reactivity and decomposition will respond to climate change in a both a qualitative (organic matter lability) and quantitiative (increased rates) manner. An Aromaticity Index was developed to represent a more direct and accurate parameter for modeling of DOM reactivity in peatlands. The abundance and community composition o ...

Faculties, publications and doctoral theses in departments or divisions of chemistry, chemical engineering, biochemistry and pharmaceutical and/or medicinal chemistry at universities in the United States and Canada.