Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications

Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications
Title Architecture Exploration of FPGA Based Accelerators for BioInformatics Applications PDF eBook
Author B. Sharat Chandra Varma
Publisher Springer
Pages 133
Release 2016-03-02
Genre Technology & Engineering
ISBN 9811005915

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This book presents an evaluation methodology to design future FPGA fabrics incorporating hard embedded blocks (HEBs) to accelerate applications. This methodology will be useful for selection of blocks to be embedded into the fabric and for evaluating the performance gain that can be achieved by such an embedding. The authors illustrate the use of their methodology by studying the impact of HEBs on two important bioinformatics applications: protein docking and genome assembly. The book also explains how the respective HEBs are designed and how hardware implementation of the application is done using these HEBs. It shows that significant speedups can be achieved over pure software implementations by using such FPGA-based accelerators. The methodology presented in this book may also be used for designing HEBs for accelerating software implementations in other domains besides bioinformatics. This book will prove useful to students, researchers, and practicing engineers alike.

ITNG 2021 18th International Conference on Information Technology-New Generations

ITNG 2021 18th International Conference on Information Technology-New Generations
Title ITNG 2021 18th International Conference on Information Technology-New Generations PDF eBook
Author Shahram Latifi
Publisher Springer Nature
Pages 515
Release 2021-06-04
Genre Computers
ISBN 3030704165

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This volume represents the 18th International Conference on Information Technology - New Generations (ITNG), 2021. ITNG is an annual event focusing on state of the art technologies pertaining to digital information and communications. The applications of advanced information technology to such domains as astronomy, biology, education, geosciences, security, and health care are the among topics of relevance to ITNG. Visionary ideas, theoretical and experimental results, as well as prototypes, designs, and tools that help the information readily flow to the user are of special interest. Machine Learning, Robotics, High Performance Computing, and Innovative Methods of Computing are examples of related topics. The conference features keynote speakers, a best student award, poster award, service award, a technical open panel, and workshops/exhibits from industry, government and academia. This publication is unique as it captures modern trends in IT with a balance of theoretical and experimental work. Most other work focus either on theoretical or experimental, but not both. Accordingly, we do not know of any competitive literature.

Artificial Intelligence Applications and Reconfigurable Architectures

Artificial Intelligence Applications and Reconfigurable Architectures
Title Artificial Intelligence Applications and Reconfigurable Architectures PDF eBook
Author Anuradha D. Thakare
Publisher John Wiley & Sons
Pages 245
Release 2023-03-21
Genre Computers
ISBN 1119857295

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ARTIFICIAL INTELLIGENCE APPLICATIONS and RECONFIGURABLE ARCHITECTURES The primary goal of this book is to present the design, implementation, and performance issues of AI applications and the suitability of the FPGA platform. This book covers the features of modern Field Programmable Gate Arrays (FPGA) devices, design techniques, and successful implementations pertaining to AI applications. It describes various hardware options available for AI applications, key advantages of FPGAs, and contemporary FPGA ICs with software support. The focus is on exploiting parallelism offered by FPGA to meet heavy computation requirements of AI as complete hardware implementation or customized hardware accelerators. This is a comprehensive textbook on the subject covering a broad array of topics like technological platforms for the implementation of AI, capabilities of FPGA, suppliers’ software tools and hardware boards, and discussion of implementations done by researchers to encourage the AI community to use and experiment with FPGA. Readers will benefit from reading this book because It serves all levels of students and researcher’s as it deals with the basics and minute details of Ecosystem Development Requirements for Intelligent applications with reconfigurable architectures whereas current competitors’ books are more suitable for understanding only reconfigurable architectures. It focuses on all aspects of machine learning accelerators for the design and development of intelligent applications and not on a single perspective such as only on reconfigurable architectures for IoT applications. It is the best solution for researchers to understand how to design and develop various AI, deep learning, and machine learning applications on the FPGA platform. It is the best solution for all types of learners to get complete knowledge of why reconfigurable architectures are important for implementing AI-ML applications with heavy computations. Audience Researchers, industrial experts, scientists, and postgraduate students who are working in the fields of computer engineering, electronics, and electrical engineering, especially those specializing in VLSI and embedded systems, FPGA, artificial intelligence, Internet of Things, and related multidisciplinary projects.

Reconfigurable and Adaptive Computing

Reconfigurable and Adaptive Computing
Title Reconfigurable and Adaptive Computing PDF eBook
Author Nadia Nedjah
Publisher CRC Press
Pages 240
Release 2018-10-09
Genre Computers
ISBN 1498731767

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Reconfigurable computing techniques and adaptive systems are some of the most promising architectures for microprocessors. Reconfigurable and Adaptive Computing: Theory and Applications explores the latest research activities on hardware architecture for reconfigurable and adaptive computing systems. The first section of the book covers reconfigurable systems. The book presents a software and hardware codesign flow for coarse-grained systems-on-chip, a video watermarking algorithm for the H.264 standard, a solution for regular expressions matching systems, and a novel field programmable gate array (FPGA)-based acceleration solution with MapReduce framework on multiple hardware accelerators. The second section discusses network-on-chip, including an implementation of a multiprocessor system-on-chip platform with shared memory access, end-to-end quality-of-service metrics modeling based on a multi-application environment in network-on-chip, and a 3D ant colony routing (3D-ACR) for network-on-chip with three different 3D topologies. The final section addresses the methodology of system codesign. The book introduces a new software–hardware codesign flow for embedded systems that models both processors and intellectual property cores as services. It also proposes an efficient algorithm for dependent task software–hardware codesign with the greedy partitioning and insert scheduling method (GPISM) by task graph.

Reconfigurable Computing: Architectures, Tools, and Applications

Reconfigurable Computing: Architectures, Tools, and Applications
Title Reconfigurable Computing: Architectures, Tools, and Applications PDF eBook
Author Roger Woods
Publisher Springer
Pages 356
Release 2008-08-29
Genre Computers
ISBN 3540786104

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Coverage in this proceedings volume includes DNA and string processing applications, reconfigurable computing hardware and systems, image processing, run-time behavior, instruction set extension, as well as random number generation and financial computation.

Bioinformatics Research and Development

Bioinformatics Research and Development
Title Bioinformatics Research and Development PDF eBook
Author Mourad Elloumi
Publisher Springer Science & Business Media
Pages 613
Release 2008-08-31
Genre Science
ISBN 3540706003

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This volume contains the papers which were selected for presentation at the second Bio- formatics Research and Development (BIRD) conference held in Vienna, Austria during July 7–9, 2008. BIRD covers a wide range of topics related to bioinformatics. This year sequence analysis and alignment, pathways, networks, systems biology, protein and RNA structure and function, gene expression/regulation and microarrays, databases and data integration, machine learning and data analysis were the subjects of main interest. The decisions of the Program Committee are based on the recommendations of at least three, up to five, reviews for each paper. As a result, 30 of the 61 submitted c- tributions could be accepted for the conference. We were happy to have three invited talks presented by experienced researchers providing visitors with a good overview but also some very important insights into the fascinating domain of bioinformatics. Abstracts and more information on these talks are provided in the conference program as well as at the conference site. In the second part of this volume the selected contributions of the two workshops which were held in parallel to the main conference are presented: Workshop on - namical Aspects of Perturbation, Intervention and Transition in Biological Systems – PETRIN 2008 and Workshop on Algorithms in Molecular Biology – ALBIO 2008 Poster presentations of the BIRD conference are in the companion proceedings published by the Trauner Verlag, Linz.

High-Performance Computing Using FPGAs

High-Performance Computing Using FPGAs
Title High-Performance Computing Using FPGAs PDF eBook
Author Wim Vanderbauwhede
Publisher Springer Science & Business Media
Pages 798
Release 2013-08-23
Genre Technology & Engineering
ISBN 1461417910

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High-Performance Computing using FPGA covers the area of high performance reconfigurable computing (HPRC). This book provides an overview of architectures, tools and applications for High-Performance Reconfigurable Computing (HPRC). FPGAs offer very high I/O bandwidth and fine-grained, custom and flexible parallelism and with the ever-increasing computational needs coupled with the frequency/power wall, the increasing maturity and capabilities of FPGAs, and the advent of multicore processors which has caused the acceptance of parallel computational models. The Part on architectures will introduce different FPGA-based HPC platforms: attached co-processor HPRC architectures such as the CHREC’s Novo-G and EPCC’s Maxwell systems; tightly coupled HRPC architectures, e.g. the Convey hybrid-core computer; reconfigurably networked HPRC architectures, e.g. the QPACE system, and standalone HPRC architectures such as EPFL’s CONFETTI system. The Part on Tools will focus on high-level programming approaches for HPRC, with chapters on C-to-Gate tools (such as Impulse-C, AutoESL, Handel-C, MORA-C++); Graphical tools (MATLAB-Simulink, NI LabVIEW); Domain-specific languages, languages for heterogeneous computing(for example OpenCL, Microsoft’s Kiwi and Alchemy projects). The part on Applications will present case from several application domains where HPRC has been used successfully, such as Bioinformatics and Computational Biology; Financial Computing; Stencil computations; Information retrieval; Lattice QCD; Astrophysics simulations; Weather and climate modeling.