This volume is a collection of the papers presented at the Fifth IRGS in 2005. It reports the latest developments in the field and includes research on breeding, mapping of genes and quantitative trait loci, identification and cloning of cndidate genesfor biotic and abiotic stresses, gene expression, as well as genomic databases and mutant induction for functional genomics

The Rice Genetics Collection of past symposia and other selected literature contains nearly 4,400 pages of searchable information on rice genetics and cytogenetics published by the IRRI and its partners since 1964. In addition to the five genetics symposia held at 5-year intervals since 1985, the collection contains classic publications that kicked off significant reporting on these subjects in the early 1960s. This collection is a comprehensive and historical documentation on the subject of rice genetics, spanning 45 years of research and scholarly work.This technical bulletin on the Present Knowledge of Rice Genetics and Cytogenetics, written in 1964 by the late Te-Tzu Chang, a renowned geneticist, provided the first effort to bring together in one medium the voluminous multilanguage literature on these important subjects. It contains seven chapters on topics dealing with the Oryza species and species relationships; the origin and indigenous center of cultivated rices; cytological and cytogenetical studies, and their evaluation in relation to rice breeding; geographical groups of cultivated rices and intervarietal hybrid sterility in Oryza sativa; and areas requiring new or renewed research efforts.

Geneticists contribute on a wide range of topics in this book, from classical genetics to the most advanced research on sequencing of the rice genome and functional genomics. They review advances in rice research and discuss molecular markers, genome organization and gene isolation.

Genetics and breeding of agronomic traits. Genetic diversity, evolution, and alien introgression. Molecular markers, QTL mapping, and marker-assisted selection. Genomics. Gene isolation and function. Tissue culture and transformation. Genetics of rice pathogens.

Together with early theoretical work in population genetics, the debate on sources of genetic makeup initiated by proponents of the neutral theory made a solid contribution to the spectacular growth in statistical methodologies for molecular evolution. Evolutionary Genomics: Statistical and Computational Methods is intended to bring together the more recent developments in the statistical methodology and the challenges that followed as a result of rapidly improving sequencing technologies. Presented by top scientists from a variety of disciplines, the collection includes a wide spectrum of articles encompassing theoretical works and hands-on tutorials, as well as many reviews with key biological insight. Volume 2 begins with phylogenomics and continues with in-depth coverage of natural selection, recombination, and genomic innovation. The remaining chapters treat topics of more recent interest, including population genomics, -omics studies, and computational issues related to the handling of large-scale genomic data. Written in the highly successful Methods in Molecular BiologyTM series format, this work provides the kind of advice on methodology and implementation that is crucial for getting ahead in genomic data analyses. Comprehensive and cutting-edge, Evolutionary Genomics: Statistical and Computational Methods is a treasure chest of state-of the-art methods to study genomic and omics data, certain to inspire both young and experienced readers to join the interdisciplinary field of evolutionary genomics.

Improving rice populations; Methodologies for managing recurrent selection; Developing populations of recombinant genotypes; Active maintenance of populations; Population improvement; Selecting genotypes for line development; Using recurrent selection: five case studies - Irrigated rice in Goiânia, Brazil: recurrent selection conducted by Embrapa-CNPAF; Upland rice in Villavicencio, Colombia: recurrent selection conducted by CIRAD-CA and CIAT; Resistance to blast and yellow mottle virus in rice, Bouaké, Côte d'Ivoire: recurrent selection conducted by CIRAD-CA, IDESSA, and WARDA; High-altitude rice in Vinaninony and Antsirabe, Madagascar: recurrent selection conducted by CIRAD-CA and FOFIFA; Lowland rice subject to alternate periods of flooding and drought in Sikasso, Mali: recurrent selection conducted by CIRAD-CA and IER; Nomenclature for rice improvement by recurrent selection.

This book is open access under a CC BY 4.0 license. By 2050, human population is expected to reach 9.7 billion. The demand for increased food production needs to be met from ever reducing resources of land, water and other environmental constraints. Rice remains the staple food source for a majority of the global populations, but especially in Asia where ninety percent of rice is grown and consumed. Climate change continues to impose abiotic and biotic stresses that curtail rice quality and yields. Researchers have been challenged to provide innovative solutions to maintain, or even increase, rice production. Amongst them, the ‘green super rice’ breeding strategy has been successful for leading the development and release of multiple abiotic and biotic stress tolerant rice varieties. Recent advances in plant molecular biology and biotechnologies have led to the identification of stress responsive genes and signaling pathways, which open up new paradigms to augment rice productivity. Accordingly, transcription factors, protein kinases and enzymes for generating protective metabolites and proteins all contribute to an intricate network of events that guard and maintain cellular integrity. In addition, various quantitative trait loci associated with elevated stress tolerance have been cloned, resulting in the detection of novel genes for biotic and abiotic stress resistance. Mechanistic understanding of the genetic basis of traits, such as N and P use, is allowing rice researchers to engineer nutrient-efficient rice varieties, which would result in higher yields with lower inputs. Likewise, the research in micronutrients biosynthesis opens doors to genetic engineering of metabolic pathways to enhance micronutrients production. With third generation sequencing techniques on the horizon, exciting progress can be expected to vastly improve molecular markers for gene-trait associations forecast with increasing accuracy. This book emphasizes on the areas of rice science that attempt to overcome the foremost limitations in rice production. Our intention is to highlight research advances in the fields of physiology, molecular breeding and genetics, with a special focus on increasing productivity, improving biotic and abiotic stress tolerance and nutritional quality of rice.