This thesis, which won one of the six 2015 ATLAS Thesis Awards, concerns the study of the charmonium and bottomonium bound heavy quark bound states. The first section of the thesis describes the observation of a candidate for the chi_b(3P) bottomonium states. This represented the first observation of a new particle at the LHC and its existence was subsequently confirmed by D0 and LHCb experiments. The second part of the thesis presents measurements of the prompt and non-prompt production of the chi_c1 and chi_c2 charmonium states in proton-proton collisions. These measurements are compared to several theoretical predictions and can be used to inform the development of theoretical models of quarkonium production.

This concise primer reviews the latest developments in the field of jets. Jets are collinear sprays of hadrons produced in very high-energy collisions, e.g. at the LHC or at a future hadron collider. They are essential to and ubiquitous in experimental analyses, making their study crucial. At present LHC energies and beyond, massive particles around the electroweak scale are frequently produced with transverse momenta that are much larger than their mass, i.e., boosted. The decay products of such boosted massive objects tend to occupy only a relatively small and confined area of the detector and are observed as a single jet. Jets hence arise from many different sources and it is important to be able to distinguish the rare events with boosted resonances from the large backgrounds originating from Quantum Chromodynamics (QCD). This requires familiarity with the internal properties of jets, such as their different radiation patterns, a field broadly known as jet substructure. This set of notes begins by providing a phenomenological motivation, explaining why the study of jets and their substructure is of particular importance for the current and future program of the LHC, followed by a brief but insightful introduction to QCD and to hadron-collider phenomenology. The next section introduces jets as complex objects constructed from a sequential recombination algorithm. In this context some experimental aspects are also reviewed. Since jet substructure calculations are multi-scale problems that call for all-order treatments (resummations), the bases of such calculations are discussed for simple jet quantities. With these QCD and jet physics ingredients in hand, readers can then dig into jet substructure itself. Accordingly, these notes first highlight the main concepts behind substructure techniques and introduce a list of the main jet substructure tools that have been used over the past decade. Analytic calculations are then provided for several families of tools, the goal being to identify their key characteristics. In closing, the book provides an overview of LHC searches and measurements where jet substructure techniques are used, reviews the main take-home messages, and outlines future perspectives.

This thesis discusses in detail the measurement of the polarizations of all S-wave vector quarkonium states in LHC proton-proton collisions with the CMS detector. Heavy quarkonium states constitute an ideal laboratory to study non-perturbative effects of quantum chromodynamics and to understand how quarks bind into hadrons. The experimental results are interpreted through an original phenomenological approach, which leads to a coherent picture of quarkonium production cross sections and polarizations within a simple model, dominated by one single color-octet production mechanism. These findings provide new insights into the dynamics of heavy quarkonium production at the LHC, an important step towards a satisfactory understanding of hadron formation within the standard model of particle physics.

This thesis presents the first experimental calibration of the top-quark Monte-Carlo mass. It also provides the top-quark mass-independent and most precise top-quark pair production cross-section measurement to date. The most precise measurements of the top-quark mass obtain the top-quark mass parameter (Monte-Carlo mass) used in simulations, which are partially based on heuristic models. Its interpretation in terms of mass parameters used in theoretical calculations, e.g. a running or a pole mass, has been a long-standing open problem with far-reaching implications beyond particle physics, even affecting conclusions on the stability of the vacuum state of our universe. In this thesis, this problem is solved experimentally in three steps using data obtained with the compact muon solenoid (CMS) detector. The most precise top-quark pair production cross-section measurements to date are performed. The Monte-Carlo mass is determined and a new method for extracting the top-quark mass from theoretical calculations is presented. Lastly, the top-quark production cross-sections are obtained – for the first time – without residual dependence on the top-quark mass, are interpreted using theoretical calculations to determine the top-quark running- and pole mass with unprecedented precision, and are fully consistently compared with the simultaneously obtained top-quark Monte-Carlo mass.